PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0562s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 296aa    MW: 33177.6 Da    PI: 10.0855
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0562s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.42.9e-1638121186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  v  L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Cagra.0562s0030.1.p  38 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 121
                          5*************************************77666666678899*****************99997......46****9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.9E-2136123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MENGESNQET PKSLLNHDES PKKPSASSVV VDRLKRDEWS EGAVSSLLEA YESKWVLRNR  60
AKLKGQDWED VARHVSSRAT HTKSPKTQTQ CKNKIESMKK RYRSESATAD GSSWPLYPRL  120
DHLLRGTQPQ PQAVLPLNCS VPLLLLEPPS PAVAHPPQVS YGSNGVGKIP KEDGFRPEEK  180
PEKATEMDTD SSTPVVKTKV RGKKVKRRYK EEKEEIAGSI RWLAEVVMRS ERARMETMKE  240
IERMRAEAEA KRGEIDLKRT EIMANTQLEI ARLFAVAASS GHNKAVDSSL RIGRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843910.0AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400410.0AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063220.0BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292979.10.0hypothetical protein CARUB_v10019255mg
TrEMBLR0FSP90.0R0FSP9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__1832__AT3G54390.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-163sequence-specific DNA binding transcription factors